HsaALTA1043224-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000166987 | MBD6
Description
methyl-CpG binding domain protein 6 [Source:HGNC Symbol;Acc:HGNC:20445]
Coordinates
chr12:57528946-57529325:+
Coord C1 exon
chr12:57528946-57529009
Coord A exon
NA
Coord C2 exon
chr12:57529164-57529325
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGAGTAAGT
5' ss Score
10.15
3' ss Seq
TCCCCTCTGATATTAGGCAGCTG
3' ss Score
0.81
Exon sequences
Seq C1 exon
CCCTACCCGGAACAGCAATAGCTCCCGCCAGGACATTACCTTGGAACCCAGCCCTACAGCCCGA
Seq A exon
NA
Seq C2 exon
CTGTCCCTCTGCCTCCCCGGGCCCGCCCTGGCCGTCCTGCCAAAAACAAGAGGAGGAAACTGGCCCCATAGCAGCCATACCTGGAGCTGGATCTGACCCTGATTGGGGAGAGCTGAGTGCTGAGCCTTGGGAGCCCCTGCCAGCCACCTGCACCTGTGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166987-29-40,29-39-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTACCTTGGAACCCAGCCC
R:
TATGGGGCCAGTTTCCTCCTC
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains