HsaALTA1043299-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:HGNC:4425]
Coordinates
chr9:128257851-128258198:-
Coord C1 exon
chr9:128257980-128258198
Coord A exon
chr9:128257869-128257892
Coord C2 exon
chr9:128257851-128257868
Length
24 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
CTCCATTATTTTGGTTCCAGAGC
3' ss Score
6.2
Exon sequences
Seq C1 exon
GTGGCATTTTTCAACTCAGCTGTAGCCAGTGCCGAGGAGGAGCAGGCAAGGCTACGTGGGCAGCTGAAGGAGCAAAGGGTGCGCTGCCGGCGCCTGGCTCACCTGCTGGCCTCGGCCCAGAAGGAGCCTGAGGCAGCAGCCCCAGCCCCAGGGACCGGGGGTGATTCTGTGTGTGGGGAGACCCACCGGGCCCTGCAGGGGGCCATGGAGAAGCTGCAG
Seq A exon
AGCCGCTTTATGGAGCTCATGCAG
Seq C2 exon
GAGAAGGCAGACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-47-50,47-49,47-48-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.556 A=NA C2=0.032
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(25.2=100),PF078886=CALCOCO1=PU(11.9=20.5)
A:
NA
C2:
PF150701=GOLGA2L5=FE(11.9=100),PF078886=CALCOCO1=FE(27.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains