MmuALTA0008004-2/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32305475-32305875:+
Coord C1 exon
chr2:32305475-32305693
Coord A exon
chr2:32305773-32305774
Coord C2 exon
chr2:32305775-32305875
Length
2 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GACCTCTGTCTTGGCTCCAGAGC
3' ss Score
7.31
Exon sequences
Seq C1 exon
GTGGCATTCTTTAATGCCGCTATAGCCAGAGCAGAGGAAGAACAGGCCCGACTACGTGTGCAGCTGAAAGAGCAGAAGGCACGTTGCCGGAGTTTGTCTCACTTGGCAGCCCCAGTCCAAAGCAAGCTTGAAAAGGAGGCAGTGGTCCCCAGGAATGTGGATGACTCTGCATCTGAGGAGAGCAATCAGGCCCTACATGTAGCCATGGAGAAGCTGCAG
Seq A exon
AG
Seq C2 exon
CCGCTTCCTGGAGGTCATGCAGGAGAAAGTGGAGCTCAAGGAGAGGGTAGAGGAGCTTGAACATTGCTGCATTCAGCTTTCTGGAGAGACAGACACCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-49-51,49-50,49-49-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.274 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(11.6=100)
A:
NA
C2:
PF150701=GOLGA2L5=FE(5.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAGCAATCAGGCCCTA
R:
CCCTCTCCTTGAGCTCCACTT
Band lengths:
92-94
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types