HsaALTA1043300-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:HGNC:4425]
Coordinates
chr9:128257601-128257892:-
Coord C1 exon
chr9:128257790-128257892
Coord A exon
chr9:128257664-128257707
Coord C2 exon
chr9:128257601-128257663
Length
44 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TGAGCCCTGTCCTCCCGCAGGAG
3' ss Score
9.98
Exon sequences
Seq C1 exon
AGCCGCTTTATGGAGCTCATGCAGGAGAAGGCAGACCTGAAGGAGAGGGTAGAGGAACTGGAACATCGCTGCATCCAGCTTTCTGGAGAGACAGACACCATTG
Seq A exon
GAGAGTACATTGCACTGTACCAGAGCCAGAGGGCAGTGCTGAAG
Seq C2 exon
GAGCGGCACCGGGAGAAGGAGGAGTACATCAGCAGGCTGGCCCAAGACAAGGAGGAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-49-52,49-51-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(11.9=100),PF078886=CALCOCO1=FE(27.0=100)
A:
NA
C2:
PF150701=GOLGA2L5=FE(12.2=100),PF078886=CALCOCO1=FE(27.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTTTATGGAGCTCATGCA
R:
GCCTGCTGATGTACTCCTCCT
Band lengths:
138-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains