RnoALTA0016842-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11335418-11335724:+
Coord C1 exon
chr3:11335418-11335520
Coord A exon
chr3:11335618-11335646
Coord C2 exon
chr3:11335647-11335724
Length
29 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
3' ss Seq
CCTGCCTGCCGTCCCCACAGGAG
3' ss Score
11.58
Exon sequences
Seq C1 exon
AACCGCTTCCTGGAGGTCATGCAGGAGAAAGTGGAGCTCAAGGAGCGGGTGGAGGAGCTTGAACATTGCTGTATCCAGCTTTCTGGGGAGACAGACACTATTG
Seq A exon
GAGAGTACATTGCCCTCTACCAAAACCAG
Seq C2 exon
AGGGCAGTGCTGAAGGCTCGGCATTTGGAGAAGGAAGAGTATATCAGCCGGCTGGCTCAGGACAAGGAGGAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884-35-41,35-40-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(5.5=100)
A:
NA
C2:
PF150701=GOLGA2L5=FE(5.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGAGAAAGTGGAGCTCA
R:
CTTCTCCAAATGCCGAGCCTT
Band lengths:
117-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]