HsaALTA1043408-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000167306 | MYO5B
Description
myosin VB [Source:HGNC Symbol;Acc:HGNC:7603]
Coordinates
chr18:49877799-49879090:-
Coord C1 exon
chr18:49878945-49879090
Coord A exon
chr18:49877873-49877882
Coord C2 exon
chr18:49877799-49877872
Length
10 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
3' ss Seq
ACGTTTTTCTTGTTGAACAGCAA
3' ss Score
6.99
Exon sequences
Seq C1 exon
ATGAATTTGCCCAGAACTCTGTGAAGGAAAATCTCATGAAGAAAGAACTGGAGGAGGAGCGATCCCGGTACCAGAACCTTGTGAAGGAATATTCACAGTTGGAGCAGAGATACGACAACCTTCGGGATGAAATGACCATCATAAAG
Seq A exon
CAAACTCCAG
Seq C2 exon
GTCATAGGCGGAACCCATCAAACCAAAGTAGCTTAGAATCTGACTCCAATTACCCCTCCATCTCCACATCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167306-58-52,58-51-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.551 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF097894=DUF2353=FE(32.7=100)
A:
NA
C2:
PF097894=DUF2353=FE(26.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCGGTACCAGAACCTTGT
R:
TTGATGGGTTCCGCCTATGAC
Band lengths:
106-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains