RnoALTA0025409-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000014104 | Myo5b
Description
myosin Vb [Source:RGD Symbol;Acc:621347]
Coordinates
chr18:70685960-70687222:+
Coord C1 exon
chr18:70685960-70686093
Coord A exon
NA
Coord C2 exon
chr18:70687103-70687222
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACG
5' ss Score
5.93
3' ss Seq
TTTTTTTCCTCCTTCAGCAGCAA
3' ss Score
6.46
Exon sequences
Seq C1 exon
CTGAATCTTCACAGAGCTCTGTGGAGGAAAACCTGCTGATTAAGAAGGAACTGGAGGAGGAACGGTCCCGGTACCAGAACCTCGTGAAGGAGTACTCCCAGCTGGAGCAGAGATATGAGAACCTTCGGGACGAG
Seq A exon
NA
Seq C2 exon
CAAACTCCAGGCCACAGGAAGAACCCATCAAATCAAAGTAGCTTAGAATCTGACTCCAATTACCCCTCCATTTCCACCTCAGAAATCGGAGACACCGAGGATGCCCTACAGCAGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014104-46-35,46-34-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.644 A=NA C2=0.976
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTACCAGAACCTCGTGAAG
R:
TTGATGGGTTCTTCCTGTGGC
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]