HsaALTA1044672-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000169155 | ZBTB43
Description
zinc finger and BTB domain containing 43 [Source:HGNC Symbol;Acc:HGNC:17908]
Coordinates
chr9:126805006-126808915:+
Coord C1 exon
chr9:126805006-126805132
Coord A exon
chr9:126808793-126808882
Coord C2 exon
chr9:126808883-126808915
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
ACTGTTACTCTTCCTTCCAGAAG
3' ss Score
9.24
Exon sequences
Seq C1 exon
CGGGAAGCGTTTCCGGGGGCTGAAGGCACAGGCTGAATCTGTTGCGGCAGCTGAGGCTACAACAGGCCTGCGCCGGCGGCAGAGAGGATATCTTGGGCGGGGGATGTGAGCGCTGAGCCCTTGGCAG
Seq A exon
AAGTCAATGTGATTTTAATTTGAAGCAAAACTGAAATGGGTTCTTCTTCCTCATTCTATTCATGTTGCTTTTTGATGGCCATGGCATAAG
Seq C2 exon
GAACTCTATCCCAGGAATACAGCTTTGCATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169155-0-3,0-2,0-1-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTCCGGGGGCTGAAG
R:
AATGCAAAGCTGTATTCCTGGGA
Band lengths:
151-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains