RnoALTA0045299-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000017017 | Zbtb43
Description
zinc finger and BTB domain containing 43 [Source:RGD Symbol;Acc:1310287]
Coordinates
chr3:12505486-12509306:-
Coord C1 exon
chr3:12509206-12509306
Coord A exon
chr3:12505547-12505607
Coord C2 exon
chr3:12505486-12505546
Length
61 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGG
5' ss Score
10.26
3' ss Seq
GGGGTGATTTTTCCTTTCAGAAA
3' ss Score
8.77
Exon sequences
Seq C1 exon
GGGCGGAAGTTGTCCCCGCGGTGGCGGCGGAGAATAAGGCCTTCGTACGGCAACAGGGACGCTCCGGTAGGCTGGAGCTGGGAGCGCGGAGCCGTCTGAAG
Seq A exon
AAATGAGTGTGATTTAATTTACAGCAAAACTGAGAAGTGCATTCTCTCTGTATCCATTCAG
Seq C2 exon
ACTGCTCTTCGATGGCCATGACATAAGGAACATTATCCTGGGAACACAACTTTGCTCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017017-0-1,0-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGAGAATAAGGCCTTCG
R:
AGCAAAGTTGTGTTCCCAGGA
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]