HsaALTA1045444-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000170633 | RNF34
Description
ring finger protein 34 [Source:HGNC Symbol;Acc:HGNC:17297]
Coordinates
chr12:121423386-121430623:+
Coord C1 exon
chr12:121423386-121423517
Coord A exon
chr12:121430297-121430393
Coord C2 exon
chr12:121430394-121430623
Length
97 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
TTATCCTTGGACTAACTCAGTTT
3' ss Score
2.29
Exon sequences
Seq C1 exon
ATGGCGAGCGGCTGCAGCTGCAGGATGAGGAAGACGACAGCCTGTGTCGCATCTGCATGGATGCCGTCATCGACTGTGTCCTACTGGAGTGTGGGCACATGGTTACCTGCACCAAGTGCGGCAAGCGCATGA
Seq A exon
TTTTTGCAGGAGTTTTTCTTCTACTTGCCCAAACTGGACACTCACAGACATCTCGGCTATGAACTGCTCACAGCCTTCCTTGGTGACTTGCTTGCAG
Seq C2 exon
TACCTCAGGTCAATATGACAGATGTTTCCACAGCGTTTGAAGAAGGACAGGCACTGATCAGTGACCTTATTGCAGTCTGCAGAGAAGAAATAGTAATGTGAGGTGTGAAGGCCAGGAGCCAGAAGCCCCCCCGCCGCCAGACCCAGGCACTCAGCAGTGGGGACAGGTCAGAGCTCTACATATTCCAGTCCCTGCTGTGCTGCACTAAATAAAATGTTATTTGCTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170633-30-36,30-35,30-34,30-33-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.082 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF102084=Armet=PD(4.8=6.7),PF139201=zf-C3HC4_3=PU(80.5=73.3)
A:
NA
C2:
PF139201=zf-C3HC4_3=PD(17.1=4.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGCAGGATGAGGAAGAC
R:
GCCTGTCCTTCTTCAAACGCT
Band lengths:
170-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains