HsaALTD1006245-2/5 @ hg38
Alternative 5'ss
Gene
ENSG00000089094 | KDM2B
Description
lysine demethylase 2B [Source:HGNC Symbol;Acc:HGNC:13610]
Coordinates
chr12:121429097-121430469:-
Coord C1 exon
chr12:121430397-121430469
Coord A exon
chr12:121430342-121430396
Coord C2 exon
chr12:121429097-121430163
Length
55 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
ACGCAATTCCATTTTGCAAGTCT
3' ss Score
-0.79
Exon sequences
Seq C1 exon
ACTGCAATAAGGTCACTGATCAGTGCCTGTCCTTCTTCAAACGCTGTGGAAACATCTGTCATATTGACCTGAG
Seq A exon
GTACTGCAAGCAAGTCACCAAGGAAGGCTGTGAGCAGTTCATAGCCGAGATGTCT
Seq C2 exon
TCTTTCCAAGGGAGAAGCTGTTCAACCACCCGTTTGGGGGATGAGTGAGCCGACACTTTCCTTTGGTCTTTCTGAATCGTAACTGCACTGCTTTCTGGACCATTTCTAAGGCGGCCTTTACAAGAAGACATTCCTGTCGGAGAGGAGGGTGGACTTCGGAGAAATTCTCATACTGAAGCATGAGCTTAGGAGTTTCTGTTAGTGGTAGTGGTGTTTTGGACACTTCATTCCTTGCAACACCGAGGTTTTGGGTGTTGACATAAAGTGGACCACACACCACATCTGCTGCCGTCTTGACACTTTTTTTTGTTTGGTTGGTTTTGTTACATCTTACATTATGCAGAACTATTTTTGTACAAATTGTTTAAAAGTTATTTATGCAAGGTTTGAATGCATACCAGTGTTTTTATTGTTTTGAGATTGCCAATTTTCCTGATTTCCTTAAGGTAGGAGAGAATTTAACGTGTACTTCATCGACACAACCCATCTACAAATGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089094-84-69,85-69,86-69,87-69,88-69-2/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTGTGGAAACATCTGTCA
R:
GGTCCAGAAAGCAGTGCAGTT
Band lengths:
134-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains