HsaALTA1045566-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000170921 | TANC2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:HGNC Symbol;Acc:HGNC:30212]
Coordinates
chr17:63395743-63398914:+
Coord C1 exon
chr17:63395743-63395928
Coord A exon
chr17:63398821-63398848
Coord C2 exon
chr17:63398849-63398914
Length
28 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GACACAACTTCTTGTTTCAGATT
3' ss Score
8.28
Exon sequences
Seq C1 exon
GTGGATCATTTGGATAAGAACGGGCAGTGTGCTTTGGTTCATGCTGCACTCCGAGGTCATCTGGAGGTTGTCAAGTTTTTGATTCAGTGTGACTGGACGATGGCCGGCCAGCAGCAAGGAGTATTTAAGAAGAGCCATGCCATCCAACAGGCCCTCATTGCTGCAGCCAGCATGGGTTATACTGAG
Seq A exon
ATTGTCTCCTACCTACTTGATCTTCCAG
Seq C2 exon
AAAAAGATGAAGAGGAAGTAGAGCGAGCACAGATCAACAGCTTTGACAGTCTCTGGGGAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170921-57-64,57-63-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(4.3=6.5),PF0002325=Ank=WD(100=41.9)
A:
NA
C2:
PF127962=Ank_2=PD(14.3=43.8),PF0002325=Ank=PU(12.1=12.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCCATGCCATCCAACAG
R:
TCCCCAGAGACTGTCAAAGCT
Band lengths:
116-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains