HsaALTA1045690-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000171219 | CDC42BPG
Description
CDC42 binding protein kinase gamma [Source:HGNC Symbol;Acc:HGNC:29829]
Coordinates
chr11:64826474-64826794:-
Coord C1 exon
chr11:64826671-64826794
Coord A exon
chr11:64826556-64826558
Coord C2 exon
chr11:64826474-64826555
Length
3 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGG
5' ss Score
5.74
3' ss Seq
CTCCTCGTCTGCTGCTGGAGCAG
3' ss Score
-4.7
Exon sequences
Seq C1 exon
GCTCCCGAAGAGAAGGGCCGAGTTGCCCGCGGCTCCGGCCCACAGCGGCCCCACAGCTTCTCCGAGGCGTTGCGGCGCCCAGCCTCCATGGGCAGCGAAGGCCTCGGTGGAGACGCAGACCCCA
Seq A exon
CAG
Seq C2 exon
TGAAGAGGAAACCCTGGACATCCCTGTCCAGCGAGTCTGTGTCCTGCCCCCAGGGATCGCTGAGCCCTGCAACCTCCCTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171219-53-63,53-62-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTTCTCCGAGGCGTTG
R:
GGGATGTCCAGGGTTTCCTCT
Band lengths:
95-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains