RnoALTA0007934-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000027456 | Cdc42bpg
Description
CDC42 binding protein kinase gamma [Source:RGD Symbol;Acc:1307260]
Coordinates
chr1:221690567-221690892:+
Coord C1 exon
chr1:221690567-221690690
Coord A exon
chr1:221690804-221690806
Coord C2 exon
chr1:221690807-221690892
Length
3 bp
Sequences
Splice sites
5' ss Seq
CCCGTAAGG
5' ss Score
5.46
3' ss Seq
TTCTGTCTCCCTACTGCCAGTAG
3' ss Score
5.91
Exon sequences
Seq C1 exon
GCTCAGGAACAGAAGAGCAGAGGCACCCGCAGCTCCGGACCGCAGCGGCCCCACAGCTTCTCAGAGGCATTGCGGCGTCCAGTATCCATGGGCAATGATGGCCTCCCTGGAGAAACAGACCCCC
Seq A exon
TAG
Seq C2 exon
TGAAGAGGAAAGTTTGGACATCTCTGTCCAGCGAATCCGTGTCCTGCCCCCAGGGGTCCCTGAGCCCTGCAGCATCCCTGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027456-43-44,43-43-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.966
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGGAGAAACAGACCCC
R:
CTGTATCAGGGATGCTGCAGG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]