HsaALTA1046526-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000172939 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr3:38252328-38252917:+
Coord C1 exon
chr3:38252328-38252392
Coord A exon
NA
Coord C2 exon
chr3:38252817-38252917
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTC
5' ss Score
2.63
3' ss Seq
TCATTTTGTTTGGTTCTTAGGCA
3' ss Score
8.51
Exon sequences
Seq C1 exon
TGGCAGCTAATTTGCAGAAAATTGTGGAAGAACCTCAGTCAAATCGATCTGTCACTTTCAAACTG
Seq A exon
NA
Seq C2 exon
GCATCTGGTGTCGAAGGCTCAGATATTCCTGATGATGGTAAACTGATAGGATTTGCCCAGCTCAGCATCAGCTAAACCACAACCCTGGAAGAGGCGGCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172939-51-49,51-48-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAAGAACCTCAGTCAAATCG
R:
TGATGCTGAGCTGGGCAAATC
Band lengths:
113-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains