HsaALTA1046526-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000172939 | OXSR1
Description
oxidative stress responsive 1 [Source:HGNC Symbol;Acc:HGNC:8508]
Coordinates
chr3:38252328-38252917:+
Coord C1 exon
chr3:38252328-38252392
Coord A exon
chr3:38252793-38252816
Coord C2 exon
chr3:38252817-38252917
Length
24 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTC
5' ss Score
2.63
3' ss Seq
TTGTTTATAAATAATCACAGTTT
3' ss Score
2.93
Exon sequences
Seq C1 exon
TGGCAGCTAATTTGCAGAAAATTGTGGAAGAACCTCAGTCAAATCGATCTGTCACTTTCAAACTG
Seq A exon
TTTCTCATTTTGTTTGGTTCTTAG
Seq C2 exon
GCATCTGGTGTCGAAGGCTCAGATATTCCTGATGATGGTAAACTGATAGGATTTGCCCAGCTCAGCATCAGCTAAACCACAACCCTGGAAGAGGCGGCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172939-51-49,51-48-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAAGAACCTCAGTCAAATCG
R:
TGATGCTGAGCTGGGCAAATC
Band lengths:
113-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains