HsaALTA1047619-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000175221 | MED16
Description
mediator complex subunit 16 [Source:HGNC Symbol;Acc:HGNC:17556]
Coordinates
chr19:891120-893218:-
Coord C1 exon
chr19:893086-893218
Coord A exon
NA
Coord C2 exon
chr19:891120-891149
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACCACACCTCCCTCCCGCAGGAG
3' ss Score
10.92
Exon sequences
Seq C1 exon
CAGAAGTCTTTGGGAGGCGGCCCCACGCCTCAGGCGACTGGTTGTTACCGAGGAAGATGGCGGCGCCAGACCCGAGGCGCTAGGGAAGATCGCACCGCGGACGCCCGCTGAGCTTGGCGCACGGGCCGACCAG
Seq A exon
NA
Seq C2 exon
GAGCTGGTGACTGCCCTCATGTGTGATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175221-0-2,0-1-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTACCGAGGAAGATGGCG
R:
ATCACACATGAGGGCAGTCAC
Band lengths:
119-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains