RnoALTA0023722-5/8 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000011315 | Med16
Description
mediator complex subunit 16 [Source:RGD Symbol;Acc:1308001]
Coordinates
chr7:12619774-12620856:+
Coord C1 exon
chr7:12619774-12619848
Coord A exon
chr7:12620691-12620835
Coord C2 exon
chr7:12620836-12620856
Length
145 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CATGCCTCCCTTCTCCCCAGGAG
3' ss Score
11.39
Exon sequences
Seq C1 exon
GCGGCGCCGGATCCCGGGCGTTGGGGCGAGTGTGGACCGCGGCCGCCCGGTCGGCTGGGCGCCCGGGGCGGACAG
Seq A exon
GAGCCAGGGACGGTGCTGGGTGCGGTGGGTATGATGGACCTAGCCTATGTGTGCGAATGGGAGAAGTGGGCCAAGAGCACGTACTGCCCGTCGCTGCCCCTGGCCTGCGCCTGGTCCTGCAGGAACCTCATTGCCTTCACCACAG
Seq C2 exon
ACCTACGCAATGATGACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011315-7-15,7-14,7-13,7-12,7-11,7-10,7-9,7-8-5/8
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]