RnoALTD0017918-1/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000011315 | Med16
Description
mediator complex subunit 16 [Source:RGD Symbol;Acc:1308001]
Coordinates
chr7:12619774-12620856:+
Coord C1 exon
chr7:12619774-12619848
Coord A exon
NA
Coord C2 exon
chr7:12620691-12620856
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CATGCCTCCCTTCTCCCCAGGAG
3' ss Score
11.39
Exon sequences
Seq C1 exon
GCGGCGCCGGATCCCGGGCGTTGGGGCGAGTGTGGACCGCGGCCGCCCGGTCGGCTGGGCGCCCGGGGCGGACAG
Seq A exon
NA
Seq C2 exon
GAGCCAGGGACGGTGCTGGGTGCGGTGGGTATGATGGACCTAGCCTATGTGTGCGAATGGGAGAAGTGGGCCAAGAGCACGTACTGCCCGTCGCTGCCCCTGGCCTGCGCCTGGTCCTGCAGGAACCTCATTGCCTTCACCACAGACCTACGCAATGATGACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011315-7-11,8-11,9-11,10-11-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGGGCGAGTGTGGAC
R:
CCTGGTCATCATTGCGTAGGT
Band lengths:
222-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]