HsaALTA1047638-2/4 @ hg38
Alternative 3'ss
Gene
ENSG00000175264 | CHST1
Description
carbohydrate sulfotransferase 1 [Source:HGNC Symbol;Acc:HGNC:1969]
Coordinates
chr11:45652521-45665622:-
Coord C1 exon
chr11:45665178-45665622
Coord A exon
chr11:45652603-45652606
Coord C2 exon
chr11:45652521-45652602
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTG
5' ss Score
8.35
3' ss Seq
ACTTTCGCTTTGAGTTTCAGGTA
3' ss Score
4.77
Exon sequences
Seq C1 exon
GCTCGGAGCTGTAGCCGCCGCTGCCGCCGCTGCTCTTGGCTCGGGGACGCGGGCGGGCGCTCCGAGAGGCTCTGGTGCCTGCGGCTGCTGCTCTCCTCCGGCGCCCGGGGCTGCGGCGCTCCGGGTCCCGGCCCCTGTCCCGGCATCTCTCGGGTCCCTGAGCCCCGGCCCCGGGTCCCGCGTCCGGCCGGAGAGAACGCACTCAGCTGCTCGAGCCGCCCCGGGCTCGCGCCCCCGGGCCATGAAGAGGGGCCCGTGAGGCGCGCGCGGAGTCGGAGGAAGAGGAGGGAGGAGGGAGGCCGAGGAGGAGGGCGCGGGAGGCGGAGGATGCCGCCGCGGCTGCTGCCGCCGCCGCCACCCGCGGGTCCCCGGCGACCCTGACTCCAGACCCGAGGATGGAGCCGGCGCTGGGCGCTGCAGCTGCTCCCGGCGCGTCCCCGACCAG
Seq A exon
GTAG
Seq C2 exon
CTGGTGTCACTTCGGTGTGGTTGGAAGAAGACTTTCTCCCCAGCTGCATTCCCGGAGGCGCCCTTTCGACCTGGAGGCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000175264-0-5,0-4,0-3,0-2-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACTCCAGACCCGAGGATG
R:
AGTCTTCTTCCAACCACACCG
Band lengths:
101-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains