RnoALTA0008963-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007989 | Chst1
Description
carbohydrate sulfotransferase 1 [Source:RGD Symbol;Acc:1308142]
Coordinates
chr3:81498022-81509514:+
Coord C1 exon
chr3:81498022-81498149
Coord A exon
NA
Coord C2 exon
chr3:81509385-81509514
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCA
5' ss Score
7.33
3' ss Seq
AAATTAGCCTTTGGTTTCAGGTA
3' ss Score
5.83
Exon sequences
Seq C1 exon
GGAGGAGGAGGAGGAGGATGCCTCCGCCACCGCCACCACCACCCGCGGGCCCCCGGCGAGCCTGACTCCAGACCGAGGATGGAGCCGACGCTGGGCGCTGCAGCGGCTCCGGGCGCGCAGGCCACCAG
Seq A exon
NA
Seq C2 exon
GTAACTGCTGTGTGTGCTGCATGTGGTTGGAAGAAGACCCCTGTCCCCAGCTGTTCCTTTGGAGCGACCTTCTCTACCTGAAGGCCTGGGGTGAGCCACCTCCATCCCAGGACCAGCTGAGTTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007989-1-3,1-2-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCAGACCGAGGATGGAG
R:
AGGGGTCTTCTTCCAACCACA
Band lengths:
107-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]