HsaALTA1049098-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000179335 | CLK3
Description
CDC like kinase 3 [Source:HGNC Symbol;Acc:HGNC:2071]
Coordinates
chr15:74603167-74605733:+
Coord C1 exon
chr15:74603167-74603246
Coord A exon
chr15:74605462-74605599
Coord C2 exon
chr15:74605600-74605733
Length
138 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
AGGCTGGGCTTTCATCCAAGGTG
3' ss Score
2.96
Exon sequences
Seq C1 exon
GGTCCCTGCACAGTTTGCCTGCACAGGGCTGGGCCCGCAAAGCCTCGCTCCCCAACGCACTTGTTTCATCACTTCAATTG
Seq A exon
GTGACTATACAAAGGGGAAATGTGGACACGGGCACACACAGAGGGAGACACCACGCGGACATCCTGGAGGAATGTCAAAGCCTGCTGGCAAAGCACCAGAAGCTGGGGACAAGGCCTAGAACAGACCCTCCCTCACAG
Seq C2 exon
GCCTCAGGAGGAACCAACCCTGCCGACACCCTGACCTGAACTTCAGCCTTCAGAACCAAGAGACAATGAATGCCTGCCATTGAAGCTACCGTCTTCAGCACTTTGTTATCACAGCCCTAGCAAACTCACAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179335-17-7,17-5,17-4-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGTTTGCCTGCACAG
R:
CCTCTGTGAGTTTGCTAGGGC
Band lengths:
207-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains