HsaEX7008579 @ hg38
Exon Skipping
Gene
ENSG00000179335 | CLK3
Description
CDC like kinase 3 [Source:HGNC Symbol;Acc:HGNC:2071]
Coordinates
chr15:74601592-74605733:+
Coord C1 exon
chr15:74601592-74601895
Coord A exon
chr15:74603167-74603246
Coord C2 exon
chr15:74604933-74605733
Length
80 bp
Sequences
Splice sites
3' ss Seq
CATCTCCACATCCTTTCCAGGGT
3' ss Score
8.35
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GCTGAGGCAGGAGAGTCGCTTGAACCCAGGAGGCAGAGGTTGTGGTGAGCCGAGATCACGCCATTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCAAAAAAAAAAAAAAAAAAGGCTTTGGGACTAAAGCCCGTATGCAGCCGCCCCTGGGCACATATACGTGGTTTTATGACTTTGGTACTGACTCAGCCTAACTGGACCCCAGATACAGGAGAAACTGAGAAGGACGGAGAACATAAGCACTGTCCCCGGTGCACTGTGTCCCATGTCATCCTCACATCAATCCTGTGTCATAG
Seq A exon
GGTCCCTGCACAGTTTGCCTGCACAGGGCTGGGCCCGCAAAGCCTCGCTCCCCAACGCACTTGTTTCATCACTTCAATTG
Seq C2 exon
AGCCTGCATCCTGCTCCTGTGGCTGACTGGGGAGGGGCCAGCTGCATCCCCATCTAGGGGCCCTGCTCCCCCATCCTCTCATGCCTGCAGAAACCTTCACCCTGGCTCTTGGGTTTGGGCAGGTCCAGCCTGCAGAGGGGAGCGGATCTCCTCCTGGGCCCTGGCCTGCCCTCCCTGGCTGGCATGTGGACTAGGGGCCTGGGGGCTCACTGGATGGTGCCCGCCCAGACTCACGGCAGCTCCTCCTGCGTGCACTCTGGCCTGTGCAGCTGTGTAAGGGTCCTGCGGTTACATGATGGGAAAAGCAAGAGGGAGCATCTGGGGCCCTGAAGTCCCAAGTCACACCCAAACCAAACCACCCAGCCAGGAAGATAGCAGGAAGCAAATTGGAGGCGTTCTGGGTTGAACTGTATCCCCAGCAACAACAACAAAAAGATATATTGACATCCCCAGTACCTCCTAATGAGACAGAATCATTACAGAGGTAATCAGACTAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179335-'12-2,'12-1,17-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACATAAGCACTGTCCCCGG
R:
AGAGCCAGGGTGAAGGTTTCT
Band lengths:
174-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains