HsaALTA1049100-3/3 @ hg38
Alternative 3'ss
Gene
ENSG00000179335 | CLK3
Description
CDC like kinase 3 [Source:HGNC Symbol;Acc:HGNC:2071]
Coordinates
chr15:74619197-74620207:+
Coord C1 exon
chr15:74619197-74619348
Coord A exon
chr15:74619967-74620008
Coord C2 exon
chr15:74620009-74620207
Length
42 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GGTCTCTTGCTTGCTAACAGCAA
3' ss Score
5.54
Exon sequences
Seq C1 exon
ATGCATCACTGTAAGCGATACCGCTCCCCTGAACCAGACCCGTACCTGAGCTACCGATGGAAGAGGAGGAGGTCCTACAGTCGGGAACATGAAGGGAGACTGCGATACCCGTCCCGAAGGGAGCCTCCCCCACGAAGATCTCGGTCCAGAAG
Seq A exon
CAAGGACCCAGCTGACCAGCGTCCCCATCCCCCTTTTGGCAG
Seq C2 exon
CCATGACCGCCTGCCCTACCAGAGGAGGTACCGGGAGCGCCGTGACAGCGATACATACCGGTGTGAAGAGCGGAGCCCATCCTTTGGAGAGGACTACTATGGACCTTCACGTTCTCGTCATCGTCGGCGATCGCGGGAGAGGGGGCCATACCGGACCCGCAAGCATGCCCACCACTGCCACAAACGCCGCACCAGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179335-35-32,35-31,35-30-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=NA C2=0.777
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTACCTGAGCTACCGATGGA
R:
GTACCTCCTCTGGTAGGGCAG
Band lengths:
143-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains