HsaALTA1049100-1/3 @ hg38
Alternative 3'ss
Gene
ENSG00000179335 | CLK3
Description
CDC like kinase 3 [Source:HGNC Symbol;Acc:HGNC:2071]
Coordinates
chr15:74619197-74620207:+
Coord C1 exon
chr15:74619197-74619348
Coord A exon
NA
Coord C2 exon
chr15:74620009-74620207
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CCCCATCCCCCTTTTGGCAGCCA
3' ss Score
6.33
Exon sequences
Seq C1 exon
ATGCATCACTGTAAGCGATACCGCTCCCCTGAACCAGACCCGTACCTGAGCTACCGATGGAAGAGGAGGAGGTCCTACAGTCGGGAACATGAAGGGAGACTGCGATACCCGTCCCGAAGGGAGCCTCCCCCACGAAGATCTCGGTCCAGAAG
Seq A exon
NA
Seq C2 exon
CCATGACCGCCTGCCCTACCAGAGGAGGTACCGGGAGCGCCGTGACAGCGATACATACCGGTGTGAAGAGCGGAGCCCATCCTTTGGAGAGGACTACTATGGACCTTCACGTTCTCGTCATCGTCGGCGATCGCGGGAGAGGGGGCCATACCGGACCCGCAAGCATGCCCACCACTGCCACAAACGCCGCACCAGGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179335-35-32,35-31,35-30-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.632 A=NA C2=0.777
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTCCTACAGTCGGGAACA
R:
GTACCTCCTCTGGTAGGGCAG
Band lengths:
115-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains