BtaALTA0007373-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000007304 | CLK3
Description
Bos taurus CDC-like kinase 3 (CLK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001034248]
Coordinates
chr21:34447433-34448457:-
Coord C1 exon
chr21:34448306-34448457
Coord A exon
chr21:34447628-34447649
Coord C2 exon
chr21:34447433-34447627
Length
22 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
TGACCAGTGACTCTTGGCAGCCA
3' ss Score
3.04
Exon sequences
Seq C1 exon
ATGCATCACTGTAAGCGATACCGCTCCCCTGAGCCAGACCCGTACCTGAGCTACCGATGGAAGAGGAGGAGGTCTTACAGTCGGGAGCACGAAGGGAGATTGCGATACCCGTCTCGAAGGGAGCCGCCGCCACGGAGATCTCGGTCTAGAAG
Seq A exon
CCATGACCGCTTGCCCTACCAG
Seq C2 exon
AGGAGATACCGGGAGCACCGTGACAGCGACACATACCGGTGTGAAGACCGGAGCCCATCCTTTGGGGAGGACTACTACGGATCTTCACGTTGCCATCATCGTCGGCGATCACGGGAGAGGGAGCCATACCGGACCCGCAAGCACGCCCACCACTGCCACAAACGCCGCACCAGGTCTTGTAGCAGCGCCTCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007304-9-5,9-4,9-2-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.608 A=NA C2=0.753
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTGCGATACCCGTCTCGA
R:
CTTCACACCGGTATGTGTCGC
Band lengths:
102-124
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development