GgaALTA1008709-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000001362 | CLK3
Description
dual specificity protein kinase CLK3 [Source:RefSeq peptide;Acc:NP_001012542]
Coordinates
chr10:1980605-1982145:-
Coord C1 exon
chr10:1981996-1982145
Coord A exon
chr10:1980795-1980818
Coord C2 exon
chr10:1980605-1980794
Length
24 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GGATCTTGTTTGTGCTGCAGCCA
3' ss Score
5.39
Exon sequences
Seq C1 exon
GATGCACCACTGCAAGAGGTACCGCTCCCCGGAGCAGGAGGCCTGCTGGGGCCCGCGCTGGAAGAGGAAGCGTTCCCGGAGCAGGGCCTACGAGGGCCGCCCGCGCTGCCCGCCCCGCAGGGACCTGCCCAGGAGGTCGCGATCCAGGAG
Seq A exon
CCATGACAGGATGCCTTATCACAG
Seq C2 exon
GAGATACAGAGACCGACGGGACAGCGACGCCTACAGATTCGAAGAGCGGAGCCCGTCCTTCGACGACGACTATTACTCGACCCGCACGCGGCACTGGCGGCGATCCCGGGACAGAGAGCAGTACTATGACAGGAAGCACCAGCACTACTGCAGGAAACGCAGGACCAGGTCTTGTAGCAGTGCCTCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001362-2-1,2-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.540 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTCGCGATCCAGGAG
R:
TGCGGGTCGAGTAATAGTCGT
Band lengths:
105-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]