HsaALTA1049441-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000180488 | MIGA1
Description
mitoguardin 1 [Source:HGNC Symbol;Acc:HGNC:24741]
Coordinates
chr1:77866338-77873120:+
Coord C1 exon
chr1:77866338-77866391
Coord A exon
NA
Coord C2 exon
chr1:77873004-77873120
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TCTCCTTTACTTCCCAGCAGATC
3' ss Score
8.77
Exon sequences
Seq C1 exon
GCTGTGGCTTCAAGTTGTTGGTCGGTGCTGAAACAGAAAAGACAACAGATGAAG
Seq A exon
NA
Seq C2 exon
ATCCCAGATGGATTTTTTGCCCATTTTTATGCCATTTGTGAACACATCAGTCCTGTCCTAGCCTGGGGCTTTTTGGGTCCTAGAAATTCTCTGTATGATTTATGTTGCTTTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180488-32-39,32-38-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(3.1=100)
A:
NA
C2:
PF102654=DUF2217=FE(7.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTGGTCGGTGCTGAAACA
R:
CCAGGCTAGGACAGGACTGAT
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains