HsaALTA1049441-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000180488 | MIGA1
Description
mitoguardin 1 [Source:HGNC Symbol;Acc:HGNC:24741]
Coordinates
chr1:77866338-77873120:+
Coord C1 exon
chr1:77866338-77866391
Coord A exon
chr1:77873001-77873003
Coord C2 exon
chr1:77873004-77873120
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
GATTCTCCTTTACTTCCCAGCAG
3' ss Score
5.64
Exon sequences
Seq C1 exon
GCTGTGGCTTCAAGTTGTTGGTCGGTGCTGAAACAGAAAAGACAACAGATGAAG
Seq A exon
CAG
Seq C2 exon
ATCCCAGATGGATTTTTTGCCCATTTTTATGCCATTTGTGAACACATCAGTCCTGTCCTAGCCTGGGGCTTTTTGGGTCCTAGAAATTCTCTGTATGATTTATGTTGCTTTTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180488-32-39,32-38-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(3.1=100)
A:
NA
C2:
PF102654=DUF2217=FE(7.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTGGTCGGTGCTGAAACA
R:
CCAGGCTAGGACAGGACTGAT
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains