RnoALTA0024103-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000056332 | Miga1
Description
mitoguardin 1 [Source:RGD Symbol;Acc:1559958]
Coordinates
chr2:257495548-257500432:-
Coord C1 exon
chr2:257500379-257500432
Coord A exon
chr2:257495665-257495667
Coord C2 exon
chr2:257495548-257495664
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
GACTGCCTTTTGTTTCCCAGCAG
3' ss Score
6.86
Exon sequences
Seq C1 exon
GCTGTGGCTTCAAGTTGTTGGTCAGTGCTGAAACAGAAAAGGCAACAGATGAAG
Seq A exon
CAG
Seq C2 exon
ATCTCAGATGGATTCTTCGCCCATTTTTACGCCATTTGTGAGCATATAAGCCCTGTCTTAGCCTGGGGCTTCTTGGGTCCTAGAAATTCTCTCTATGACTTATGTTGCTTCTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056332-31-24,31-23-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(3.1=100)
A:
NA
C2:
PF102654=DUF2217=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGGCTTCAAGTTGTTGG
R:
ACAAATGGCGTAAAAATGGGCG
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]