HsaALTA1050362-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000183378 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr11:7695058-7695710:-
Coord C1 exon
chr11:7695570-7695710
Coord A exon
chr11:7695189-7695300
Coord C2 exon
chr11:7695058-7695188
Length
112 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
3' ss Seq
ACGTCTTTTCTTGTTCGCAGTGT
3' ss Score
9.64
Exon sequences
Seq C1 exon
GAAAATTTTGTGGAGAAAGCCTCCCTTCATCCATTCTTATTGGCTCTAATTCTCTAAGGCTGAAATTCGTCTCTGATGCCACAGATAATGCAGCTGGGTTTAATCTTACCTATAAAGCTCTTAAACCAAACTACATTCCTG
Seq A exon
TGTCTGAAAATGCAATTGATATGCATCATTTTCAGGAGACAGGAGGGAGAGCAGTGAGAATTCTTCTTTATTTGAATGGTGCCATCTGTTTGGACTTTTTCTTACGTTTCAG
Seq C2 exon
ATTCAGGTTGCAGTTACTTAACTGTCCTTTTTGAAGAAGGTCTCATACAGAGTCTAAACTATCCTGAAAACTACAGTGACAAGGCTAACTGTGACTGGATTTTTCAAGCCTCCAAACATCACCTAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183378-13-12,13-11-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(34.3=77.1)
A:
NA
C2:
PF0043115=CUB=PU(36.4=90.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAGCCTCCCTTCATCCA
R:
AGGTGATGTTTGGAGGCTTGA
Band lengths:
253-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains