HsaEX6000662 @ hg38
Exon Skipping
Gene
ENSG00000183378 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr11:7695058-7696589:-
Coord C1 exon
chr11:7696465-7696589
Coord A exon
chr11:7695570-7695710
Coord C2 exon
chr11:7695058-7695188
Length
141 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTCTCATCCTGCAGGAA
3' ss Score
12.4
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
Exon sequences
Seq C1 exon
ACGGTGTGTCTGGACCCTGCTGGTACCAGAGGAAATGCATGTGTTGCTCAGTTTTTCCCACCTAGATGTTGAGTCTTGTCACCACAGTTACCTGTCAATGTATTCTTTAGAAGACAGACCCATTG
Seq A exon
GAAAATTTTGTGGAGAAAGCCTCCCTTCATCCATTCTTATTGGCTCTAATTCTCTAAGGCTGAAATTCGTCTCTGATGCCACAGATAATGCAGCTGGGTTTAATCTTACCTATAAAGCTCTTAAACCAAACTACATTCCTG
Seq C2 exon
ATTCAGGTTGCAGTTACTTAACTGTCCTTTTTGAAGAAGGTCTCATACAGAGTCTAAACTATCCTGAAAACTACAGTGACAAGGCTAACTGTGACTGGATTTTTCAAGCCTCCAAACATCACCTAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183378_MULTIEX1-5/5=4-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(38.9=100)
A:
PF0043115=CUB=PD(34.3=77.1)
C2:
PF0043115=CUB=PU(36.4=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTGTGTCTGGACCCTG
R:
AGGTGATGTTTGGAGGCTTGA
Band lengths:
249-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains