MmuEX6012990 @ mm10
Exon Skipping
Gene
ENSMUSG00000048236 | Ovch2
Description
ovochymase 2 [Source:MGI Symbol;Acc:MGI:3045251]
Coordinates
chr7:107788602-107790203:-
Coord C1 exon
chr7:107790079-107790203
Coord A exon
chr7:107789090-107789230
Coord C2 exon
chr7:107788602-107788732
Length
141 bp
Sequences
Splice sites
3' ss Seq
AGACTCTTCTCACACTGCAGGGA
3' ss Score
6.22
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
Exon sequences
Seq C1 exon
ACTGTGTGTCTGGACCTTCCTGGTTCCAGAGGACATGCATATGTTGCTCAATTTGTCACACTTGGATATAGAGTCTTGTCACCACAATTACCTGGCAATGTACTCTTTAGAAGACAGACTCGTTG
Seq A exon
GGAAATTCTGTGGAGAAAATCTCCCTTCATCCATTCTCATTGGCTCCAGTTCCATCCGGCTGAGGTTCATCTCTGATGCCACAGATTATGCCACTGGGTTTAATCTCACCTATAAAGCACTTAAGCCGAGATACCATCCTG
Seq C2 exon
ATTCCGGCTGCAGGTCTCTAACTATCCTCTTTGAAGAAGGCACTATACAGAGTCTTCACTATCCTGAAGACTACAGTAACATGGCTAGCTGTACCTGGATTTTTCAAGCCCCCAACTATTGCCTAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048236_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(38.9=100)
A:
PF0043115=CUB=PD(34.3=77.1)
C2:
PF0043115=CUB=PU(36.4=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGTGTCTGGACCTTCCT
R:
GGCAATAGTTGGGGGCTTGAA
Band lengths:
248-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types