HsaEX6000662 @ hg19
Exon Skipping
Gene
ENSG00000183378 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:29970]
Coordinates
chr11:7716289-7717257:-
Coord C1 exon
chr11:7717216-7717257
Coord A exon
chr11:7716801-7716899
Coord C2 exon
chr11:7716289-7716419
Length
99 bp
Sequences
Splice sites
3' ss Seq
GGCCTCATCCATTCTTATTGGCT
3' ss Score
-2.01
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
Exon sequences
Seq C1 exon
GAAAATTTTGTGGAGAAAGCCTCCCTTCATCCATTCTTTTTT
Seq A exon
GCTCTAATTCTCTAAGGCTGAAATTCGTCTCTGATGCCACAGATAATGCAGCTGGGTTTAATCTTACCTATAAAGCTCTTAAACCAAACTACATTCCTG
Seq C2 exon
ATTCAGGTTGCAGTTACTTAACTGTCCTTTTTGAAGAAGGTCTCATACAGAGTCTAAACTATCCTGAAAACTACAGTGACAAGGCTAACTGTGACTGGATTTTTCAAGCCTCCAAACATCACCTAATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183378-'11-12,'11-11,12-12=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(11.1=100)
A:
PF0043115=CUB=PD(25.0=71.1)
C2:
PF0043115=CUB=PU(36.4=90.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAGCCTCCCTTCATCCA
R:
TAATTAGGTGATGTTTGGAGGCT
Band lengths:
159-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)