BtaEX6059417 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037921 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr15:45615558-45617290:+
Coord C1 exon
chr15:45615558-45615682
Coord A exon
chr15:45616443-45616583
Coord C2 exon
chr15:45617280-45617290
Length
141 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTTCTTATTTTGCAGCGA
3' ss Score
12.26
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
Exon sequences
Seq C1 exon
ACAGTGTGCCTGGACCCTGTTGGTACCAGAGGAAATGCATGTGCTCCTCAGTTTTTCCCACTTTGATGCAGAGTCTTGTGACCATAATTACCTGTCAATATATTCTTTAGAAGACACACTTATTG
Seq A exon
CGAAATTCTGTGGAGAGAGACTGGCTTCATCAGTTCTTGTTGGCTCCAACGCTATAAGGCTGAGCTTCATCTCTGATAACACAGATAATGCCGTTGGGTTCAATCTCACCTATAAAGCTGTTAAACCAAACTACCTTCCTG
Seq C2 exon
ATGGCAACTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037921-'12-14,'12-12,13-14=AN
Average complexity
A_C3
Mappability confidence:
89%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(38.9=100)
A:
PF0043115=CUB=PD(34.3=77.1)
C2:
PF0043115=CUB=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]