GgaEX6036823 @ galGal4
Exon Skipping
Gene
ENSGALG00000005318 | OVCH2
Description
ovochymase 2 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:29970]
Coordinates
chr5:6864785-6866415:-
Coord C1 exon
chr5:6866282-6866415
Coord A exon
chr5:6865734-6865874
Coord C2 exon
chr5:6864785-6864924
Length
141 bp
Sequences
Splice sites
3' ss Seq
TCTCTGAAATGTTGTTTCAGGGA
3' ss Score
8.37
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATTGTGCATATGGACTCTGTTTGTACCAGAAGGGAATTATATATTGCTTCATTTTTCCCACTTTGATATAGAGCCAGAAACATTTTGTGACTATGATTCTTTATCAGTCTATTCAAAAGACAACAGACTTGTTG
Seq A exon
GGAAATTCTGTGGAGGAGATCTTCCATTACCTATTTTGATTGGGTCCAATAATATAAGGCTGAAATTTGTTTCTGACAACAAGGATTATGGAACTGGTTTTTCTATGACTTATAAAGCTCTTACAACAGGTATTCTTCCTG
Seq C2 exon
GATTTCTAGATTCTGGCTGTGAGTCCTTAGCTGTCCTTTTTGAAGAAGGAGTGTTGCAAAGTATGCACTATCCAGAGAATTACAGCAATCTGGCTGTCTGTCAATGGATTATTTGTGCACCAGAGGACCATGTAATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005318-'14-13,'14-12,15-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=FE(40.5=100)
A:
PF0043115=CUB=PD(33.3=77.1)
C2:
PF0043115=CUB=PU(36.4=85.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTCTGTTTGTACCAGAAGGG
R:
TACATGGTCCTCTGGTGCACA
Band lengths:
257-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]