HsaALTA1050579-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000183914 | DNAH2
Description
dynein axonemal heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr17:7737067-7738120:+
Coord C1 exon
chr17:7737067-7737258
Coord A exon
NA
Coord C2 exon
chr17:7738040-7738120
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
GAGGGATATGTCTCTTCCAGCAA
3' ss Score
4.11
Exon sequences
Seq C1 exon
GATGGCTCTCGTCAAGCACAGTCAAACCTGACCTTTTTGTCAATCCTGAAGGAACCTTACCAGGAGTTGGCTTTCATGAAGCCCAAGGACATCTCTAGCAAGCTCCCTAAGCTGATCAGTCTCATCCGCATCATCTGGGTCAACTCTCCCCACTACAACACTCGGGAGAGACTGACCTCGCTCTTCCGAAAG
Seq A exon
NA
Seq C2 exon
CAAGGAGGACCTGCAAGGCTGCATTCTCTGTTGTCACGCTTGGAAAGATCACTACGTACAGGCTGTGCAGATGCACATCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183914-10-12,10-11-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(40.1=100)
A:
NA
C2:
PF083857=DHC_N1=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAAGGACATCTCTAGCA
R:
CTGCACAGCCTGTACGTAGTG
Band lengths:
183-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains