RnoALTA0012237-2/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56121794-56122725:-
Coord C1 exon
chr10:56122534-56122725
Coord A exon
chr10:56121871-56121874
Coord C2 exon
chr10:56121794-56121870
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
GAGGGCTATGTCTCTTCCAGCAA
3' ss Score
5.91
Exon sequences
Seq C1 exon
GATGGCTCTCGGCAAGCTCAGTCCAACCTGACTTTCTTGTCAATTCTGAGGGAACCCTACCAGGAGCTGGCCTTCATGAAACCTAAGGACATCTCCGACAAACTCCCTAAGCTGATCAGCCTCATCCGAATCATCTGGGTCAACTCTCCCCACTACAACACTCGGGAAAGGTTGACTGGCCTGTTCCGGAAG
Seq A exon
CAAG
Seq C2 exon
GAAGACCTGCAAGGCTGCATTTCCTGTTGCCACGCCTGGAAAGAGCACTACCTGCGCGCCGTACAGATGCATACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688-12-12,12-11,12-10-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.0=100)
A:
NA
C2:
PF083857=DHC_N1=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCTGGGTCAACTCTCCCC
R:
GCAACAGGAAATGCAGCCTTG
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]