HsaALTA1050991-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000184956 | MUC6
Description
mucin 6, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7517]
Coordinates
chr11:1025016-1025367:-
Coord C1 exon
chr11:1025182-1025367
Coord A exon
chr11:1025039-1025083
Coord C2 exon
chr11:1025016-1025038
Length
45 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
CCTGATGCCACCGTCTGCAGGAT
3' ss Score
6.85
Exon sequences
Seq C1 exon
GGCCTGTCCGTGGTGCTGGCGGACAGAAACTACACGGTCACCGGGGAGGAGCCCCACGTGCAGCTCGGGGTGACGCCGGGTGCGCTGAGCCTTGTCGTGGACATCAGCATCCCCGGGAGGTACAACCTGACGCTCATCTGGAACAGGCACATGACCATCCTCATCAGGATCGCCCGTGCCTCCCAG
Seq A exon
GATCCCCTCTGCGGCTTGTGTGGCAACTTCAACGGGAACATGAAG
Seq C2 exon
GACGACTTCGAGACGCGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184956-27-26,27-25-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(40.1=100)
A:
NA
C2:
PF0009420=VWD=PD(15.1=28.8),PF087426=C8=PU(28.0=26.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCCTTGTCGTGGACATC
R:
CTGCTGCGCGTCTCGAAG
Band lengths:
125-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains