MmuALTA1035657-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000048191 | Muc6
Description
mucin 6, gastric [Source:MGI Symbol;Acc:MGI:2663233]
Coordinates
chr7:141645398-141645933:-
Coord C1 exon
chr7:141645748-141645933
Coord A exon
NA
Coord C2 exon
chr7:141645398-141645637
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
CAGCAACTATGCTCTAGCAGGAT
3' ss Score
2.51
Exon sequences
Seq C1 exon
GGGCTCTTCATCACGATGGCAGACAGTAACTACACAGTCAGCGGGGAAGAGCCCCTGGTGCACCTGAAAGTGAAGCCTAGCCCCCTGAATCTTGTCCTGGACATAGACATCCCTGGAAGGCTCAACCTGACACTCGTATGGAACAAGCACATGAGTGTCTCAATCAAGATCCGCCGCGCTACCCAG
Seq A exon
NA
Seq C2 exon
GATGCCCTCTGTGGCTTGTGTGGCAACGCCAATGGGAACATGAAAGATGACTTCGAAACACGTAGCAAGTATGTGGCGTCCAATGAACTGGAGTTTGTGAACTCGTGGAAGGAAAGCCCGCTGTGTGGGGATGCAAGTTATGCGGTGGATCCCTGCAGCTTGAATACCTTCCGGCGCTCCTGGGCCGAGCGTAAATGCAACATTATCAACAGCCAGACCTTTGCTGCCTGCCACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048191-25-30,25-29-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(40.1=100)
A:
NA
C2:
PF0009420=VWD=PD(15.1=28.8),PF087426=C8=PU(28.0=26.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCAATCAAGATCCGCCGC
R:
CGCCACATACTTGCTACGTGT
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types