HsaALTA1051824-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000186814 | ZSCAN30
Description
zinc finger and SCAN domain containing 30 [Source:HGNC Symbol;Acc:HGNC:33517]
Coordinates
chr18:35263585-35264455:-
Coord C1 exon
chr18:35263945-35264455
Coord A exon
chr18:35263658-35263713
Coord C2 exon
chr18:35263585-35263657
Length
56 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTCCTGCCCTGTTGCTCTAGGAG
3' ss Score
10.19
Exon sequences
Seq C1 exon
GGAGTTGGAATTCAGAAGGAATCTCTCAGACGCAAATCTCCATCTCCTCCCTGCCTCACCTGGGCAGCCTTTTCAGACTGTCTCTGCCCAGAATGTCAGGAGAGGCCACAGTCTTGGCCTACCATGCTCCAGAAGAACAGGAAGGACTTCTAGTTGTCAAGGTTGAAGAAGAAAATTATGTTTTGGACCAGGACTTTGGCCTTCAGGAAAACCCCTGGAGCCAAGAGGTATTCCGGCAGAAGTTCAGGCAGTTTAGTTACTCTGACTCCACTGGCCCTCGGGAGGCTCTGAGCCGGCTGCGAGAGCTTTGCTGTCAGTGGTTGAGGCCGGAGGTGCACTCCAAGGAGCAGATCCTGGAGCTGCTGATGTTGGAGCAGTTCCTGGCCATCCTTCCTGAGGAGCTGCAAGCTTGGCTGCGAGAGCATCGGCCAGAGAATGGAGAGGAAGCTGTGACTATGCTGGAGGAGCTGGAAAAAGAACTGGAGGAGCCAAGGCAACAG
Seq A exon
GAGTTTTCTGCTTGTGTATCCTCAGAATGATAGTGCTGGTACTTGATTACTCCTAG
Seq C2 exon
GACACAACTCATGGCCAAGAAATGTTCTGGCAGGAAATGACATCCACAGGAGCACTGAAGTCTCTGTCTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186814-10-13,10-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.181 A=NA C2=0.784
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=69.1)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCATCGGCCAGAGAATG
R:
TCAGTGCTCCTGTGGATGTCA
Band lengths:
141-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains