MmuALTA0020914-2/2 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000024274 | Zscan30
Description
zinc finger and SCAN domain containing 30 [Source:MGI Symbol;Acc:MGI:2685600]
Coordinates
chr18:24129476-24130346:-
Coord C1 exon
chr18:24129883-24130346
Coord A exon
chr18:24129603-24129653
Coord C2 exon
chr18:24129476-24129602
Length
51 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GTCTTGCCTTGTTGCTGTAGGGT
3' ss Score
8.9
Exon sequences
Seq C1 exon
GGGTTCTTTGGATCCACCTCCTCTCTGCCTCAGCCTTTCAGATTATTCTGACCAGGATGTTCAGAGAAACAACAGCCTTGGCCTGTCATGCTTCAAAAGGACAAAATAGGCTCAACTTTGTGAAAGTTGAAGAAGAAAATGGTGTTTGGAAGCAGGACTTAAGTCTTCAGGGAAACCTCCAGAGCCAGGAGGTTTTCCGTCAGCAGTTTAGACAGTTTGGTTACTCTGATTTCACTGGGCCCCGGGAGGCTCTGAACCGACTGCAGAAGCTTTGCCAGCAGTGGCTGAGGCCAGAGGAGCACTCTAAGGAGCAGATCCTAGAATTGCTGGTGCTAGAGCAGTTCATGACCATCTTGCCTATGGAGCTGAAGGCCTGGGTGCAAGAACACAGGCCCAGAAGTGGAGAGGAGGCTGTGACTCTGCTGGAGGAGCTAGAGAGAGAATTTGATGAACCCAAGCACCAG
Seq A exon
GGTTTTTCTCTTAGCTGCACTCAGTCACACTACTGGTACTTGTTACTCTAG
Seq C2 exon
GACACAGCTCATGGTCAAGAAATGATCTGCAAAGAAACGACACTCATGGGAACATCAGAGTCTCTAAGTAGTCCACTGCAGTCCTTGGAGAGCCATTGCAAGAGTGAACCCCAGGATCCCCAGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024274-1-3,1-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.640
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=69.1)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGAGGAGCTAGAGAGAGA
R:
CTCTCCAAGGACTGCAGTGGA
Band lengths:
135-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: