HsaALTA1051909-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000187045 | TMPRSS6
Description
transmembrane protease, serine 6 [Source:HGNC Symbol;Acc:HGNC:16517]
Coordinates
chr22:37084295-37084839:-
Coord C1 exon
chr22:37084727-37084839
Coord A exon
NA
Coord C2 exon
chr22:37084295-37084404
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
GGCCCGCTCCTCCCTCCCAGGTG
3' ss Score
10.14
Exon sequences
Seq C1 exon
CCTGTGAAGTGAACCTGACGCTGGACAACAGGCTCGACTCCCAGGGCGTCCTCAGCACCCCGTACTTCCCCAGCTACTACTCGCCCCAAACCCACTGCTCCTGGCACCTCACG
Seq A exon
NA
Seq C2 exon
GTGCCCTCTCTGGACTACGGCTTGGCCCTCTGGTTTGATGCCTATGCACTGAGGAGGCAGAAGTATGATTTGCCGTGCACCCAGGGCCAGTGGACGATCCAGAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187045-17-19,17-18-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(28.2=81.6)
A:
NA
C2:
PF0043115=CUB=PD(53.0=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGAAGTGAACCTGACGCTG
R:
TACTTCTGCCTCCTCAGTGCA
Band lengths:
176-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains