HsaALTA1051916-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000187048 | CYP4A11
Description
cytochrome P450 family 4 subfamily A member 11 [Source:HGNC Symbol;Acc:HGNC:2642]
Coordinates
chr1:46935000-46935647:-
Coord C1 exon
chr1:46935523-46935647
Coord A exon
chr1:46935059-46935091
Coord C2 exon
chr1:46935000-46935058
Length
33 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CTGGTTTTTTCCCGTGTGAGGAA
3' ss Score
0.85
Exon sequences
Seq C1 exon
GACAAATGGGAAGAGCTCCTTGGCCAGGATTCCCCTCTGGAGGTCTTTCAGCACGTCTCCTTGATGACCCTGGACACCATCATGAAGTGTGCCTTCAGCCATCAGGGCAGCATCCAGGTGGACAG
Seq A exon
GAATGCCTTTCACCAGAATGACACCATCTACAG
Seq C2 exon
CCTGACCTCTGCTGGCCGCTGGACACACCGCGCCTGCCAGCTGGCCCATCAGCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187048-8-11,8-10,8-8-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(24.8=100),PF0006717=p450=PU(1.2=4.8)
A:
NA
C2:
PF0006717=p450=PD(1.8=14.3),PF0006717=p450=FE(11.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCCTGGACACCATCATGA
R:
CTGTGTGCTGATGGGCCAG
Band lengths:
120-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains