HsaEX1010889 @ hg38
Exon Skipping
Gene
ENSG00000187048 | CYP4A11
Description
cytochrome P450 family 4 subfamily A member 11 [Source:HGNC Symbol;Acc:HGNC:2642]
Coordinates
chr1:46934453-46935647:-
Coord C1 exon
chr1:46935551-46935647
Coord A exon
chr1:46935000-46935154
Coord C2 exon
chr1:46934453-46934559
Length
155 bp
Sequences
Splice sites
3' ss Seq
TTCTTCATACTCTCCCTCAGGAA
3' ss Score
9.61
5' ss Seq
CAGGTTCTG
5' ss Score
2.14
Exon sequences
Seq C1 exon
GACAAATGGGAAGAGCTCCTTGGCCAGGATTCCCCTCTGGAGGTCTTTCAGCACGTCTCCTTGATGACCCTGGACACCATCATGAAGTGTGCCTTCA
Seq A exon
GAATTCTCAGTCCTACATACAGGCCATTAGTGACCTGAACAACCTGGTTTTTTCCCGTGTGAGGAATGCCTTTCACCAGAATGACACCATCTACAGCCTGACCTCTGCTGGCCGCTGGACACACCGCGCCTGCCAGCTGGCCCATCAGCACACAG
Seq C2 exon
ACCAAGTGATCCAACTGAGGAAGGCTCAACTACAGAAGGAGGGGGAGCTGGAGAAGATCAAGAGGAAGAGGCATTTGGATTTTCTGGATATCCTCCTCTTGGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187048_MULTIEX1-1/5=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.386
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(24.8=100),PF0006717=p450=PU(1.2=4.8)
A:
PF0006717=p450=PD(1.8=14.3),PF0006717=p450=FE(11.9=100)
C2:
PF0006717=p450=PD(3.6=16.2)
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATGGGAAGAGCTCCTTGG
R:
TTTGGCCAAGAGGAGGATATC
Band lengths:
203-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains