BtaEX6017986 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011976 | CYP4B1
Description
Bos taurus cytochrome P450, family 4, subfamily B, polypeptide 1 (CYP4B1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076202]
Coordinates
chr3:99942378-99943194:-
Coord C1 exon
chr3:99943070-99943194
Coord A exon
chr3:99942639-99942790
Coord C2 exon
chr3:99942378-99942484
Length
152 bp
Sequences
Splice sites
3' ss Seq
CCCTTCCCTCTACTGTGCAGGGA
3' ss Score
8.22
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GACAAGTGGGAGAAAAAGGCTCGTGAGCAAAAGAGCTTTGACATCTACAGCGATGTGGGCCACATGGCGCTGGACTCGCTCATGAAGTGCACCTTTGGCAAAGGAACCAGCGGCCTGAATGACAG
Seq A exon
GGACAATAACTACTACCTGTCGGTCAAAGAACTCACACTGCTGATGCAGCAGCGCATCGATTCCTTCCAGTACCACAATGACTTCATCTACTTTCTCACCCCACATGGCCGCCGCTTCCTGCGGGCCTGCCAGGTGGCCCATGACCACACAG
Seq C2 exon
ACCAGGTCATCAGGGAACGGAAAGCAGCCCTCCAGGATGAGAAAGAGCGGGAGAGGATACAGAGCAAGAGGCACCTGGACTTCCTGGACATTCTCCTGGGGGCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011976-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.139
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.0=100)
A:
PF0006717=p450=FE(11.2=100)
C2:
PF0006717=p450=FE(7.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGAGAAAAAGGCTCGTG
R:
CAAGCCCCCAGGAGAATGTC
Band lengths:
227-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]