RnoEX0025990 @ rn6
Exon Skipping
Gene
ENSRNOG00000055078 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:RGD Symbol;Acc:2480]
Coordinates
chr5:134514658-134515410:-
Coord C1 exon
chr5:134515286-134515410
Coord A exon
chr5:134514897-134515048
Coord C2 exon
chr5:134514658-134514764
Length
152 bp
Sequences
Splice sites
3' ss Seq
CCCTCTGCCCTTCCATGTAGAGA
3' ss Score
9.65
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GACAAGTGGGAGAAAAAGGCTAGTGAAAATAAGAGCTTTGACATCTTCTGTGACGTAGGCCACATGGCCCTGGACACCCTCATGAAGTGCACCTTCGGCAAAGGAGACAGCGGCCTAGGCCACAG
Seq A exon
AGACAACAGCTACTACCTGGCGGTCAGTGACCTCACACTGCTGATGCAGCAGCGCATCGACTCCTTCCAGTACCATAATGACTTCATTTACTGGCTCACTCCACATGGCCGCCGCTTCCTGCGGGCCTGCAAGATAGCCCATGACCATACAG
Seq C2 exon
ATGAGGTCATCAGGCAGCGGAAGGCAGCACTGCAGGATGAGAAAGAGCGGAAAAAGATTCAGCAGCGGAGGCACCTGGACTTCCTGGACATTCTCCTGGGTGTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055078-'8-8,'8-5,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.0=100)
A:
PF0006717=p450=FE(11.2=100)
C2:
PF0006717=p450=FE(7.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGTGGGAGAAAAAGGCT
R:
CCGGACACCCAGGAGAATGTC
Band lengths:
232-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]