MmuEX6095203 @ mm10
Exon Skipping
Gene
ENSMUSG00000028713 | Cyp4b1
Description
cytochrome P450, family 4, subfamily b, polypeptide 1 [Source:MGI Symbol;Acc:MGI:103225]
Coordinates
chr4:115635632-115636388:-
Coord C1 exon
chr4:115636264-115636388
Coord A exon
chr4:115635874-115636025
Coord C2 exon
chr4:115635632-115635738
Length
152 bp
Sequences
Splice sites
3' ss Seq
CTCCACTCTCTTCTGTATAGTGA
3' ss Score
5.3
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GACAAGTGGGAGAAAAAGGCTAGTGAGAATAAGAGCTTTGACATCTTCTGTGACGTGGGCCACATGGCACTGGACACCCTCATGAAGTGCACCTTTGGCAAAGGAGACAGCGGCCTAAGCCACAG
Seq A exon
TGACAACAGCTACTACCTGGCAGTTAGTGACCTCACACTGCTGATGCAGCAGCGCATCGACTCCTTCCAGTACCATAATGACTTCATTTACTGGCTCACACCACATGGCCGCCGTTTCTTGCGGGCCTGCCAGATAGCCCATGACCATACAG
Seq C2 exon
ATCATGTCATCAGGCAGCGGAAGGCAGCTCTGCAGGATGAGAAGGAGCAGAAAAAGCTTCAGGAGCGGAGACACCTGGACTTCCTCGACATTCTCCTGGGTGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028713_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.221
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(20.0=100)
A:
PF0006717=p450=FE(11.2=100)
C2:
PF0006717=p450=FE(17.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAGTGGGAGAAAAAGGCT
R:
CACCCAGGAGAATGTCGAGGA
Band lengths:
227-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types