GgaEX7006929 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNN4]
Coordinates
chr8:20776143-20777295:+
Coord C1 exon
chr8:20776143-20776267
Coord A exon
chr8:20776592-20776743
Coord C2 exon
chr8:20777189-20777295
Length
152 bp
Sequences
Splice sites
3' ss Seq
ATCCCATCCCTTCTTTCCAGGCA
3' ss Score
9.46
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GATAAGTGGGAAAAGCTGATCACAAATGGGAAATCGGTGGAGCTCTTTGAGCACGTCAGCTTGATGACTCTCGACAGCATCATGAAATGTGCCTTCAGCTACCACAGCAACTGCCAGACCGACAG
Seq A exon
GCAAAACACCTACATCCAGGCTGTCTATGACCTGTGCCGCATGGTGCACGAGCGACTCCGCATCTTCCCCTACCACAATGACTTCATTTACTGGCTCAGCCCCCATGGATACCAGTTCAGGAAGGTTTGCCAGCTTGCTCACGACCACACAG
Seq C2 exon
ACAAAGTGATCCAGGAGCGAAAGGAGTCCCTTAAAGATGAACGGGAGTTTGAGAAGATCAAGAAGAAGAGGCATTTGGACTTCCTGGACATTCTACTCTGTGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020688-'5-5,'5-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.0=100)
A:
PF0006717=p450=FE(11.2=100)
C2:
PF0006717=p450=FE(7.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGGGAAAAGCTGATCACA
R:
AGCACAGAGTAGAATGTCCAGGA
Band lengths:
226-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]