DreEX0025520 @ danRer10
Exon Skipping
Gene
ENSDARG00000004964 | cyp4t8
Description
cytochrome P450, family 4, subfamily T, polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-031219-3]
Coordinates
chr16:4801114-4808759:-
Coord C1 exon
chr16:4808715-4808759
Coord A exon
chr16:4803778-4803932
Coord C2 exon
chr16:4801114-4801220
Length
155 bp
Sequences
Splice sites
3' ss Seq
CCATTCTGATCTCATTGCAGTGG
3' ss Score
7.42
5' ss Seq
CAGGTGACG
5' ss Score
7.66
Exon sequences
Seq C1 exon
AACCCAAAGATGACTACGCATACAAGTTTTTCATCCCATGGTTAG
Seq A exon
TGGAACCAACCCGTATATCCAGGCAGTGTTTGACCTCTGCCACCTGGTGAACCTCAGGTTCAGAGTGTTTCCGTACCACAGCAAGGCCATATTTCATCTCAGTCCACATGGATACCGGTTCAGGAAGGCAGCCAGCATTGCACACAATCACACAG
Seq C2 exon
CGGAAGTTATCAGAAAGAGGAAAGAAGTCTTGAAGATGGAGGAGGAGCAGGGCATTGTTAAAAACAGACGATATTTAGACTTTCTGGATATTCTTCTGTCTGCTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004964_MULTIEX1-3/6=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(3.7=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAAAGATGACTACGCATACA
R:
TCGAGCAGACAGAAGAATATCCA
Band lengths:
151-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]